Left reads: Input : 1126646 Mapped : 972265 (86.3% of input) of these: 167602 (17.2%) have multiple alignments (32990 have >20) Right reads: Input : 1126646 Mapped : 947535 (84.1% of input) of these: 164960 (17.4%) have multiple alignments (32971 have >20) 85.2% overall read mapping rate. Aligned pairs: 841157 of these: 149977 (17.8%) have multiple alignments 20164 ( 2.4%) are discordant alignments 72.9% concordant pair alignment rate.