Left reads: Input : 3140948 Mapped : 2712545 (86.4% of input) of these: 708121 (26.1%) have multiple alignments (156989 have >20) Right reads: Input : 3140948 Mapped : 2707837 (86.2% of input) of these: 711844 (26.3%) have multiple alignments (156989 have >20) 86.3% overall read mapping rate. Aligned pairs: 2428998 of these: 633535 (26.1%) have multiple alignments 68460 ( 2.8%) are discordant alignments 75.2% concordant pair alignment rate.