Left reads: Input : 711643 Mapped : 599815 (84.3% of input) of these: 12698 ( 2.1%) have multiple alignments (957 have >20) Right reads: Input : 711643 Mapped : 584865 (82.2% of input) of these: 12482 ( 2.1%) have multiple alignments (957 have >20) 83.2% overall read mapping rate. Aligned pairs: 531415 of these: 11359 ( 2.1%) have multiple alignments 5540 ( 1.0%) are discordant alignments 73.9% concordant pair alignment rate.