Left reads: Input : 1480528 Mapped : 1343995 (90.8% of input) of these: 99933 ( 7.4%) have multiple alignments (9637 have >20) Right reads: Input : 1480528 Mapped : 1273680 (86.0% of input) of these: 96356 ( 7.6%) have multiple alignments (9637 have >20) 88.4% overall read mapping rate. Aligned pairs: 1186085 of these: 90305 ( 7.6%) have multiple alignments 22306 ( 1.9%) are discordant alignments 78.6% concordant pair alignment rate.