Left reads: Input : 1029652 Mapped : 865892 (84.1% of input) of these: 33939 ( 3.9%) have multiple alignments (3752 have >20) Right reads: Input : 1029652 Mapped : 841308 (81.7% of input) of these: 33307 ( 4.0%) have multiple alignments (3752 have >20) 82.9% overall read mapping rate. Aligned pairs: 773616 of these: 30735 ( 4.0%) have multiple alignments 11513 ( 1.5%) are discordant alignments 74.0% concordant pair alignment rate.