Left reads: Input : 360164 Mapped : 299291 (83.1% of input) of these: 10436 ( 3.5%) have multiple alignments (771 have >20) Right reads: Input : 360164 Mapped : 264010 (73.3% of input) of these: 9438 ( 3.6%) have multiple alignments (771 have >20) 78.2% overall read mapping rate. Aligned pairs: 233451 of these: 8155 ( 3.5%) have multiple alignments 5008 ( 2.1%) are discordant alignments 63.4% concordant pair alignment rate.