Left reads: Input : 697062 Mapped : 606053 (86.9% of input) of these: 33535 ( 5.5%) have multiple alignments (4150 have >20) Right reads: Input : 697062 Mapped : 590367 (84.7% of input) of these: 32943 ( 5.6%) have multiple alignments (4154 have >20) 85.8% overall read mapping rate. Aligned pairs: 545135 of these: 30670 ( 5.6%) have multiple alignments 9111 ( 1.7%) are discordant alignments 76.9% concordant pair alignment rate.