Left reads: Input : 337512 Mapped : 285338 (84.5% of input) of these: 8986 ( 3.1%) have multiple alignments (859 have >20) Right reads: Input : 337512 Mapped : 267240 (79.2% of input) of these: 8440 ( 3.2%) have multiple alignments (859 have >20) 81.9% overall read mapping rate. Aligned pairs: 238274 of these: 7516 ( 3.2%) have multiple alignments 5373 ( 2.3%) are discordant alignments 69.0% concordant pair alignment rate.