Left reads: Input : 1129514 Mapped : 984257 (87.1% of input) of these: 149612 (15.2%) have multiple alignments (30982 have >20) Right reads: Input : 1129514 Mapped : 997813 (88.3% of input) of these: 152923 (15.3%) have multiple alignments (30982 have >20) 87.7% overall read mapping rate. Aligned pairs: 894921 of these: 137863 (15.4%) have multiple alignments 21472 ( 2.4%) are discordant alignments 77.3% concordant pair alignment rate.