Left reads: Input : 813676 Mapped : 666082 (81.9% of input) of these: 21877 ( 3.3%) have multiple alignments (2810 have >20) Right reads: Input : 813676 Mapped : 685704 (84.3% of input) of these: 22504 ( 3.3%) have multiple alignments (2810 have >20) 83.1% overall read mapping rate. Aligned pairs: 610609 of these: 20339 ( 3.3%) have multiple alignments 9308 ( 1.5%) are discordant alignments 73.9% concordant pair alignment rate.