Left reads: Input : 296519 Mapped : 248190 (83.7% of input) of these: 9135 ( 3.7%) have multiple alignments (859 have >20) Right reads: Input : 296519 Mapped : 230269 (77.7% of input) of these: 8521 ( 3.7%) have multiple alignments (859 have >20) 80.7% overall read mapping rate. Aligned pairs: 203171 of these: 7475 ( 3.7%) have multiple alignments 4271 ( 2.1%) are discordant alignments 67.1% concordant pair alignment rate.