Left reads: Input : 853726 Mapped : 743959 (87.1% of input) of these: 44441 ( 6.0%) have multiple alignments (2252 have >20) Right reads: Input : 853726 Mapped : 720139 (84.4% of input) of these: 43632 ( 6.1%) have multiple alignments (2252 have >20) 85.7% overall read mapping rate. Aligned pairs: 663379 of these: 41174 ( 6.2%) have multiple alignments 11005 ( 1.7%) are discordant alignments 76.4% concordant pair alignment rate.