Left reads: Input : 1268669 Mapped : 1133326 (89.3% of input) of these: 120620 (10.6%) have multiple alignments (12819 have >20) Right reads: Input : 1268669 Mapped : 1077366 (84.9% of input) of these: 116790 (10.8%) have multiple alignments (12819 have >20) 87.1% overall read mapping rate. Aligned pairs: 989921 of these: 108884 (11.0%) have multiple alignments 18691 ( 1.9%) are discordant alignments 76.6% concordant pair alignment rate.