Left reads: Input : 168452 Mapped : 128711 (76.4% of input) of these: 5763 ( 4.5%) have multiple alignments (456 have >20) Right reads: Input : 168452 Mapped : 123686 (73.4% of input) of these: 5473 ( 4.4%) have multiple alignments (457 have >20) 74.9% overall read mapping rate. Aligned pairs: 103373 of these: 4726 ( 4.6%) have multiple alignments 1827 ( 1.8%) are discordant alignments 60.3% concordant pair alignment rate.