Left reads: Input : 1062726 Mapped : 903436 (85.0% of input) of these: 27382 ( 3.0%) have multiple alignments (1946 have >20) Right reads: Input : 1062726 Mapped : 898137 (84.5% of input) of these: 27432 ( 3.1%) have multiple alignments (1946 have >20) 84.8% overall read mapping rate. Aligned pairs: 808053 of these: 24785 ( 3.1%) have multiple alignments 10473 ( 1.3%) are discordant alignments 75.1% concordant pair alignment rate.