Left reads: Input : 2259227 Mapped : 2029610 (89.8% of input) of these: 302371 (14.9%) have multiple alignments (46753 have >20) Right reads: Input : 2259227 Mapped : 1939004 (85.8% of input) of these: 292604 (15.1%) have multiple alignments (46753 have >20) 87.8% overall read mapping rate. Aligned pairs: 1798664 of these: 272146 (15.1%) have multiple alignments 40690 ( 2.3%) are discordant alignments 77.8% concordant pair alignment rate.