Left reads: Input : 163900 Mapped : 135755 (82.8% of input) of these: 6126 ( 4.5%) have multiple alignments (115 have >20) Right reads: Input : 163900 Mapped : 126601 (77.2% of input) of these: 5729 ( 4.5%) have multiple alignments (115 have >20) 80.0% overall read mapping rate. Aligned pairs: 112400 of these: 5077 ( 4.5%) have multiple alignments 2385 ( 2.1%) are discordant alignments 67.1% concordant pair alignment rate.