Left reads: Input : 589982 Mapped : 470360 (79.7% of input) of these: 42123 ( 9.0%) have multiple alignments (4923 have >20) Right reads: Input : 589982 Mapped : 338640 (57.4% of input) of these: 30226 ( 8.9%) have multiple alignments (4923 have >20) 68.6% overall read mapping rate. Aligned pairs: 289865 of these: 26247 ( 9.1%) have multiple alignments 4763 ( 1.6%) are discordant alignments 48.3% concordant pair alignment rate.