Left reads: Input : 439658 Mapped : 369448 (84.0% of input) of these: 39597 (10.7%) have multiple alignments (1924 have >20) Right reads: Input : 439658 Mapped : 349876 (79.6% of input) of these: 37952 (10.8%) have multiple alignments (1924 have >20) 81.8% overall read mapping rate. Aligned pairs: 306117 of these: 33592 (11.0%) have multiple alignments 8488 ( 2.8%) are discordant alignments 67.7% concordant pair alignment rate.