Left reads: Input : 177445 Mapped : 144880 (81.6% of input) of these: 5460 ( 3.8%) have multiple alignments (176 have >20) Right reads: Input : 177445 Mapped : 143490 (80.9% of input) of these: 5519 ( 3.8%) have multiple alignments (176 have >20) 81.3% overall read mapping rate. Aligned pairs: 125206 of these: 4853 ( 3.9%) have multiple alignments 3364 ( 2.7%) are discordant alignments 68.7% concordant pair alignment rate.