Left reads: Input : 489777 Mapped : 437049 (89.2% of input) of these: 13468 ( 3.1%) have multiple alignments (520 have >20) Right reads: Input : 489777 Mapped : 412460 (84.2% of input) of these: 12762 ( 3.1%) have multiple alignments (520 have >20) 86.7% overall read mapping rate. Aligned pairs: 379793 of these: 11588 ( 3.1%) have multiple alignments 6014 ( 1.6%) are discordant alignments 76.3% concordant pair alignment rate.