Left reads: Input : 535159 Mapped : 461203 (86.2% of input) of these: 34406 ( 7.5%) have multiple alignments (4355 have >20) Right reads: Input : 535159 Mapped : 438118 (81.9% of input) of these: 33033 ( 7.5%) have multiple alignments (4355 have >20) 84.0% overall read mapping rate. Aligned pairs: 392432 of these: 29931 ( 7.6%) have multiple alignments 7589 ( 1.9%) are discordant alignments 71.9% concordant pair alignment rate.