Left reads: Input : 334503 Mapped : 279230 (83.5% of input) of these: 21443 ( 7.7%) have multiple alignments (3971 have >20) Right reads: Input : 334503 Mapped : 276322 (82.6% of input) of these: 21173 ( 7.7%) have multiple alignments (3971 have >20) 83.0% overall read mapping rate. Aligned pairs: 245517 of these: 19083 ( 7.8%) have multiple alignments 4360 ( 1.8%) are discordant alignments 72.1% concordant pair alignment rate.