Left reads: Input : 476966 Mapped : 364563 (76.4% of input) of these: 8525 ( 2.3%) have multiple alignments (1121 have >20) Right reads: Input : 476966 Mapped : 378762 (79.4% of input) of these: 8651 ( 2.3%) have multiple alignments (1122 have >20) 77.9% overall read mapping rate. Aligned pairs: 305671 of these: 7272 ( 2.4%) have multiple alignments 3993 ( 1.3%) are discordant alignments 63.2% concordant pair alignment rate.