Left reads: Input : 373921 Mapped : 317769 (85.0% of input) of these: 10532 ( 3.3%) have multiple alignments (189 have >20) Right reads: Input : 373921 Mapped : 299429 (80.1% of input) of these: 10116 ( 3.4%) have multiple alignments (189 have >20) 82.5% overall read mapping rate. Aligned pairs: 264429 of these: 8911 ( 3.4%) have multiple alignments 6128 ( 2.3%) are discordant alignments 69.1% concordant pair alignment rate.