Left reads: Input : 301939 Mapped : 267544 (88.6% of input) of these: 8654 ( 3.2%) have multiple alignments (1397 have >20) Right reads: Input : 301939 Mapped : 256346 (84.9% of input) of these: 8191 ( 3.2%) have multiple alignments (1397 have >20) 86.8% overall read mapping rate. Aligned pairs: 235499 of these: 7562 ( 3.2%) have multiple alignments 5283 ( 2.2%) are discordant alignments 76.2% concordant pair alignment rate.