Left reads: Input : 1423750 Mapped : 1255341 (88.2% of input) of these: 107676 ( 8.6%) have multiple alignments (4337 have >20) Right reads: Input : 1423750 Mapped : 1245103 (87.5% of input) of these: 108008 ( 8.7%) have multiple alignments (4337 have >20) 87.8% overall read mapping rate. Aligned pairs: 1130774 of these: 99731 ( 8.8%) have multiple alignments 19874 ( 1.8%) are discordant alignments 78.0% concordant pair alignment rate.