Left reads: Input : 3338093 Mapped : 2974998 (89.1% of input) of these: 1350436 (45.4%) have multiple alignments (489345 have >20) Right reads: Input : 3338093 Mapped : 2924971 (87.6% of input) of these: 1331440 (45.5%) have multiple alignments (487861 have >20) 88.4% overall read mapping rate. Aligned pairs: 2684126 of these: 1222928 (45.6%) have multiple alignments 89757 ( 3.3%) are discordant alignments 77.7% concordant pair alignment rate.