Left reads: Input : 169355 Mapped : 136368 (80.5% of input) of these: 9536 ( 7.0%) have multiple alignments (240 have >20) Right reads: Input : 169355 Mapped : 131529 (77.7% of input) of these: 9345 ( 7.1%) have multiple alignments (240 have >20) 79.1% overall read mapping rate. Aligned pairs: 116468 of these: 8337 ( 7.2%) have multiple alignments 3375 ( 2.9%) are discordant alignments 66.8% concordant pair alignment rate.