Left reads: Input : 1499206 Mapped : 1364153 (91.0% of input) of these: 117697 ( 8.6%) have multiple alignments (8763 have >20) Right reads: Input : 1499206 Mapped : 1281522 (85.5% of input) of these: 113131 ( 8.8%) have multiple alignments (8763 have >20) 88.2% overall read mapping rate. Aligned pairs: 1193163 of these: 106307 ( 8.9%) have multiple alignments 23743 ( 2.0%) are discordant alignments 78.0% concordant pair alignment rate.