Left reads: Input : 3684732 Mapped : 3251946 (88.3% of input) of these: 1198318 (36.8%) have multiple alignments (282401 have >20) Right reads: Input : 3684732 Mapped : 3208638 (87.1% of input) of these: 1189421 (37.1%) have multiple alignments (282378 have >20) 87.7% overall read mapping rate. Aligned pairs: 2902841 of these: 1075731 (37.1%) have multiple alignments 98388 ( 3.4%) are discordant alignments 76.1% concordant pair alignment rate.