Left reads: Input : 261217 Mapped : 225785 (86.4% of input) of these: 31820 (14.1%) have multiple alignments (3740 have >20) Right reads: Input : 261217 Mapped : 222607 (85.2% of input) of these: 31573 (14.2%) have multiple alignments (3740 have >20) 85.8% overall read mapping rate. Aligned pairs: 201008 of these: 28687 (14.3%) have multiple alignments 3711 ( 1.8%) are discordant alignments 75.5% concordant pair alignment rate.