Left reads: Input : 848938 Mapped : 686737 (80.9% of input) of these: 234005 (34.1%) have multiple alignments (38209 have >20) Right reads: Input : 848938 Mapped : 680929 (80.2% of input) of these: 233560 (34.3%) have multiple alignments (38209 have >20) 80.6% overall read mapping rate. Aligned pairs: 604304 of these: 209264 (34.6%) have multiple alignments 18033 ( 3.0%) are discordant alignments 69.1% concordant pair alignment rate.