Left reads: Input : 557201 Mapped : 487907 (87.6% of input) of these: 30862 ( 6.3%) have multiple alignments (2307 have >20) Right reads: Input : 557201 Mapped : 459530 (82.5% of input) of these: 29664 ( 6.5%) have multiple alignments (2307 have >20) 85.0% overall read mapping rate. Aligned pairs: 416069 of these: 27260 ( 6.6%) have multiple alignments 8598 ( 2.1%) are discordant alignments 73.1% concordant pair alignment rate.