Left reads: Input : 1105473 Mapped : 931359 (84.2% of input) of these: 456108 (49.0%) have multiple alignments (86977 have >20) Right reads: Input : 1105473 Mapped : 917715 (83.0% of input) of these: 451132 (49.2%) have multiple alignments (86977 have >20) 83.6% overall read mapping rate. Aligned pairs: 828159 of these: 406278 (49.1%) have multiple alignments 34530 ( 4.2%) are discordant alignments 71.8% concordant pair alignment rate.