Left reads: Input : 1235050 Mapped : 1105563 (89.5% of input) of these: 114338 (10.3%) have multiple alignments (16668 have >20) Right reads: Input : 1235050 Mapped : 1059558 (85.8% of input) of these: 111608 (10.5%) have multiple alignments (16668 have >20) 87.7% overall read mapping rate. Aligned pairs: 972095 of these: 103477 (10.6%) have multiple alignments 20395 ( 2.1%) are discordant alignments 77.1% concordant pair alignment rate.