Left reads:
          Input     :   1439372
           Mapped   :   1278886 (88.9% of input)
            of these:    116318 ( 9.1%) have multiple alignments (16395 have >20)
Right reads:
          Input     :   1439372
           Mapped   :   1265976 (88.0% of input)
            of these:    116743 ( 9.2%) have multiple alignments (16395 have >20)
88.4% overall read mapping rate.

Aligned pairs:   1159502
     of these:    106834 ( 9.2%) have multiple alignments
                   21497 ( 1.9%) are discordant alignments
79.1% concordant pair alignment rate.