Left reads: Input : 1082953 Mapped : 902443 (83.3% of input) of these: 183673 (20.4%) have multiple alignments (24880 have >20) Right reads: Input : 1082953 Mapped : 888967 (82.1% of input) of these: 182524 (20.5%) have multiple alignments (24880 have >20) 82.7% overall read mapping rate. Aligned pairs: 796492 of these: 165332 (20.8%) have multiple alignments 17527 ( 2.2%) are discordant alignments 71.9% concordant pair alignment rate.