Left reads: Input : 774151 Mapped : 667137 (86.2% of input) of these: 40731 ( 6.1%) have multiple alignments (572 have >20) Right reads: Input : 774151 Mapped : 630449 (81.4% of input) of these: 39451 ( 6.3%) have multiple alignments (572 have >20) 83.8% overall read mapping rate. Aligned pairs: 562257 of these: 35269 ( 6.3%) have multiple alignments 10893 ( 1.9%) are discordant alignments 71.2% concordant pair alignment rate.