Left reads: Input : 727304 Mapped : 630202 (86.6% of input) of these: 11222 ( 1.8%) have multiple alignments (1114 have >20) Right reads: Input : 727304 Mapped : 610152 (83.9% of input) of these: 10954 ( 1.8%) have multiple alignments (1114 have >20) 85.3% overall read mapping rate. Aligned pairs: 557092 of these: 10245 ( 1.8%) have multiple alignments 7738 ( 1.4%) are discordant alignments 75.5% concordant pair alignment rate.