Left reads: Input : 3639561 Mapped : 3239239 (89.0% of input) of these: 894031 (27.6%) have multiple alignments (200680 have >20) Right reads: Input : 3639561 Mapped : 3165663 (87.0% of input) of these: 878950 (27.8%) have multiple alignments (200373 have >20) 88.0% overall read mapping rate. Aligned pairs: 2893082 of these: 810243 (28.0%) have multiple alignments 57698 ( 2.0%) are discordant alignments 77.9% concordant pair alignment rate.