Left reads: Input : 538664 Mapped : 460410 (85.5% of input) of these: 24728 ( 5.4%) have multiple alignments (3087 have >20) Right reads: Input : 538664 Mapped : 468128 (86.9% of input) of these: 25004 ( 5.3%) have multiple alignments (3087 have >20) 86.2% overall read mapping rate. Aligned pairs: 418943 of these: 22658 ( 5.4%) have multiple alignments 10151 ( 2.4%) are discordant alignments 75.9% concordant pair alignment rate.