Left reads: Input : 1167225 Mapped : 1018003 (87.2% of input) of these: 137961 (13.6%) have multiple alignments (18510 have >20) Right reads: Input : 1167225 Mapped : 1001761 (85.8% of input) of these: 136868 (13.7%) have multiple alignments (18510 have >20) 86.5% overall read mapping rate. Aligned pairs: 921789 of these: 126152 (13.7%) have multiple alignments 16441 ( 1.8%) are discordant alignments 77.6% concordant pair alignment rate.