Left reads: Input : 1571037 Mapped : 1425828 (90.8% of input) of these: 106730 ( 7.5%) have multiple alignments (11392 have >20) Right reads: Input : 1571037 Mapped : 1350698 (86.0% of input) of these: 103203 ( 7.6%) have multiple alignments (11392 have >20) 88.4% overall read mapping rate. Aligned pairs: 1256732 of these: 96343 ( 7.7%) have multiple alignments 22404 ( 1.8%) are discordant alignments 78.6% concordant pair alignment rate.