Left reads: Input : 489830 Mapped : 414487 (84.6% of input) of these: 23249 ( 5.6%) have multiple alignments (1411 have >20) Right reads: Input : 489830 Mapped : 387547 (79.1% of input) of these: 22202 ( 5.7%) have multiple alignments (1411 have >20) 81.9% overall read mapping rate. Aligned pairs: 342816 of these: 19779 ( 5.8%) have multiple alignments 9051 ( 2.6%) are discordant alignments 68.1% concordant pair alignment rate.