Left reads: Input : 778956 Mapped : 683774 (87.8% of input) of these: 148706 (21.7%) have multiple alignments (34323 have >20) Right reads: Input : 778956 Mapped : 686564 (88.1% of input) of these: 150347 (21.9%) have multiple alignments (34323 have >20) 88.0% overall read mapping rate. Aligned pairs: 618619 of these: 135189 (21.9%) have multiple alignments 18031 ( 2.9%) are discordant alignments 77.1% concordant pair alignment rate.