Left reads: Input : 257010 Mapped : 209569 (81.5% of input) of these: 9966 ( 4.8%) have multiple alignments (536 have >20) Right reads: Input : 257010 Mapped : 196900 (76.6% of input) of these: 9427 ( 4.8%) have multiple alignments (536 have >20) 79.1% overall read mapping rate. Aligned pairs: 171595 of these: 8227 ( 4.8%) have multiple alignments 5007 ( 2.9%) are discordant alignments 64.8% concordant pair alignment rate.