Left reads: Input : 482024 Mapped : 406241 (84.3% of input) of these: 28325 ( 7.0%) have multiple alignments (2999 have >20) Right reads: Input : 482024 Mapped : 394013 (81.7% of input) of these: 27742 ( 7.0%) have multiple alignments (2999 have >20) 83.0% overall read mapping rate. Aligned pairs: 345911 of these: 24728 ( 7.1%) have multiple alignments 7901 ( 2.3%) are discordant alignments 70.1% concordant pair alignment rate.