Left reads: Input : 635354 Mapped : 559295 (88.0% of input) of these: 17709 ( 3.2%) have multiple alignments (583 have >20) Right reads: Input : 635354 Mapped : 539547 (84.9% of input) of these: 17149 ( 3.2%) have multiple alignments (583 have >20) 86.5% overall read mapping rate. Aligned pairs: 491981 of these: 15570 ( 3.2%) have multiple alignments 8115 ( 1.6%) are discordant alignments 76.2% concordant pair alignment rate.