Left reads: Input : 1734373 Mapped : 1549048 (89.3% of input) of these: 132033 ( 8.5%) have multiple alignments (17638 have >20) Right reads: Input : 1734373 Mapped : 1500150 (86.5% of input) of these: 130475 ( 8.7%) have multiple alignments (17638 have >20) 87.9% overall read mapping rate. Aligned pairs: 1379221 of these: 119736 ( 8.7%) have multiple alignments 25613 ( 1.9%) are discordant alignments 78.0% concordant pair alignment rate.